Hmmm...I suppose that does complicate things. Are there any antiviral medicines that you can use to get the herpes under control? If so, it would be interesting to know if they help the fissure too.
If the two seem to be related, you'll want to find out for sure if a tight sphincter plays a role in causing the fissure. I believe there are definitive tests that can be run to see what your IAS resting pressure is like.
If the sphincter is NOT tight, I'd be more worried about LIS causing incontinence then.
I am sorry you have so much to deal with, and you are very young too--